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Research Projects

The following list is a sample of research projects that the lab is involved in.

4D Nucleome Data Portal

Collect, store, curate, display, and analyze data generated in the 4DN Network.


HiGlass is a tool for exploring genomic contact matrices and tracks. It can be configured to explore and compare contact matrices across multiple scales.


HiPiler is an interactive visualization interface for the exploration and visualization of regions-of-interest such as loops in large genome interaction matrices.

Refinery Platform

A cloud-based data management, analysis, and visualization platform for reproducible biomedical research.


An ontology-guided visual exploration system that combines a powerful metadata search with a tree map and a node-link diagram that visualize the repository structure, provide context to retrieved data sets, and serve as an interface to drive semantic querying and browsing of the repository.

Caleydo StratomeX

Integrative visualization of stratified heterogeneous data for disease subtype analysis.


An R package to generate static UpSet plots.